trans_ID — trans_ID • masstools

Translate metabolite ID.

trans_ID(
  query = "C00001",
  from = "KEGG",
  to = "PubChem SID",
  top = 1,
  server = c("cts.fiehnlab", "chemspider")
)

Arguments

query: The ID/name of metabolite you want to translate.
from: The databases of metabolites. Supported database can be shown using trans_id_database("from").
to: The databases of metabolites. Supported database can be shown using trans_id_database("to").
top: How many results should be returned?
server: server. cts.fiehnlab (http://cts.fiehnlab.ucdavis.edu/service/convert) or chemspider (https://www.chemspider.com/InChI.asmx)

Value

A data frame.

Author

Xiaotao Shen shenxt1990@outlook.com

Examples

trans_ID(
    query = "C00001",
    from = "KEGG",
    to = "PubChem SID",
    top = 1,
    server = "cts.fiehnlab"
)
#>     KEGG PubChem SID
#> 1 C00001   103059594

trans_ID(
    query = "C00001",
    to = "Human Metabolome Database",
    server = "cts.fiehnlab"
)
#>     KEGG Human Metabolome Database
#> 1 C00001               HMDB0002111